Comparing maps3 years ago
The example map | Comparing optimization runs | Comparing 3D to 2D
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Making an antigenic map from titer data3 years ago
Reading in the titer data | Creating the acmap object | Running optimizations | Viewing the map | Using make.acmap()
Working with sequence data3 years ago
Adding sequence data | Viewing sequence data | Tutorials
Assessing map uncertainty3 years ago
Assessing uncertainty in an antigenic map | A note on confidence vs actual goodness of fit | Geometric uncertainty and triangulation blobs | Bootstrapping methods | Bootstrapping to assess sample uncertainty | Bootstrapping to assess measurement error uncertainty | Viewing bootstrap results
Customising map appearance3 years ago
Main point style functions | An example of styling a map
Merging maps5 years ago
Merge types | "table" | "reoptimized-merge" | "incremental-merge" | "frozen-overlay" | "relaxed-overlay" | "frozen-merge"
