Package: Racmacs
Type: Package
Title: Antigenic Cartography Macros
Version: 1.2.9
Date: 2023-11-30
Authors@R: 
  c(person(given = "Sam",
           family = "Wilks",
           role = c("aut", "cre"),
           email = "sw463@cam.ac.uk"))
Description: A toolkit for making antigenic maps from immunological
        assay data, in order to quantify and visualize antigenic
        differences between different pathogen strains as described in
        Smith et al. (2004) <doi:10.1126/science.1097211> and used in
        the World Health Organization influenza vaccine strain
        selection process. Additional functions allow for the
        diagnostic evaluation of antigenic maps and an interactive
        viewer is provided to explore antigenic relationships amongst
        several strains and incorporate the visualization of associated
        genetic information.
Depends: R (>= 4.0)
Imports: Rcpp, jsonlite, ks, brotli, shiny, shinyFiles, shinyjs,
        htmlwidgets, ggplot2 (>= 3.0.0), htmltools, rmarchingcubes,
        shape, MASS, magrittr, igraph, dplyr, vctrs, rlang (>= 1.0.0)
Suggests: testthat, r3js, knitr, rmarkdown, rstudioapi, plotly,
        geometry, readxl, stringr, tibble, tidyr, base64enc, lifecycle,
        MCMCpack, spelling
LinkingTo: Rcpp, RcppArmadillo, RcppProgress, RcppEnsmallen, rapidjsonr
Encoding: UTF-8
RoxygenNote: 7.2.3
Roxygen: list(markdown = TRUE)
VignetteBuilder: knitr
URL: https://acorg.github.io/Racmacs/,
        https://github.com/acorg/Racmacs/
BugReports: https://github.com/acorg/Racmacs/issues
License: AGPL-3
Language: en-GB
Config/pak/sysreqs: cmake libglpk-dev make libuv1-dev libxml2-dev
        zlib1g-dev
Repository: https://acorg.r-universe.dev
Date/Publication: 2024-06-27 10:26:25 UTC
RemoteUrl: https://github.com/acorg/racmacs
RemoteRef: HEAD
RemoteSha: f75f9cd2d6b24f101ce71e39e2188490efa9ef1d
NeedsCompilation: yes
Packaged: 2026-06-10 07:47:37 UTC; root
Author: Sam Wilks [aut, cre]
Maintainer: Sam Wilks <sw463@cam.ac.uk>